PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC844_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 629aa    MW: 70001.2 Da    PI: 6.8189
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC844_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.5e-12438485355
                HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                ++h   E++RR+++N++f  Lr+++P+ +      K +K++iL  ++ Y+++L+
  RrC844_p1 438 ANHAVLEKKRREKLNERFLILRSIIPSiN------KSDKVSILDDTIGYLQELE 485
                5899***********************77......99**************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-5014206IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.878435484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-17437502IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-9438485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.36E-12439489No hitNo description
Gene3DG3DSA:4.10.280.109.4E-17439503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-13441490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MVMGQNITSV PENLKKQLAV SIRSIQWSYA IFWSVSASQP GVLEWGEGYY NGDIKTRKTI  60
QASEIKADQL GLRRSEQLRE LFESLSIAES SSTGTAVGSQ VTRRASAAAL SPEDLADTEW  120
YYLVCMSFVF KIGEGMPGRT FANDEPIWLC NAGTADSKVF GRSLLAKSAS VNTVICFPFL  180
GGVVEIGTTE HIAEDMNIIQ CVKKSFLETP ASHATISQQR SDYHIDNVLD PQHILGDEIY  240
APMFGNRPFQ ATSPSRTTNG FDPEHDQLAE DHDSFMAEGI NSQVQSWQHM DDELSNCVHQ  300
SLNSSDCVSQ TFAEAGARRV SCGARKGRVQ RLGHFQEQHK NVKMLSFDPR NDDVHYQSVI  360
STIFKTSHQL ILGPQFRNCD KRSSFTRWKK PPSSSSFGTA SVVPPSQGML KKIIFEVPRV  420
HQKEKLMLDS PGAGDETANH AVLEKKRREK LNERFLILRS IIPSINKSDK VSILDDTIGY  480
LQELEKRVQE LESCRESTDT ETRGITTMKR KKPYDAGERT SANCTNNEIG YGKRTQVGQA  540
EPIETSLTDN LRISPFGNEV VIEMRCVWRE GVLLEIMDVI SNLNLDSHSV QSSTGDGLLC  600
LTVSCKHKGS KIATPGMIKE ALKKVAWIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-16122067192Transcription factor MYC3
4rqw_B4e-16122067192Transcription factor MYC3
4rs9_A4e-16122067192Transcription factor MYC3
4yz6_A4e-16122067192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1444449KKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140081.10.0PREDICTED: transcription factor GLABRA 3 isoform X1
RefseqXP_009140082.10.0PREDICTED: transcription factor GLABRA 3 isoform X2
SwissprotQ9FN690.0GL3_ARATH; Transcription factor GLABRA 3
TrEMBLM4E9Q20.0M4E9Q2_BRARP; Uncharacterized protein
STRINGBra025508.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25922867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.10.0bHLH family protein